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EncartaLabs

R Bioconductor for Bioinformatics

( Duration: 3 Days )

Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language. In R Bioconductor for Bioinformatics training course, you will learn to perform computational and statistical analysis on the results of biological experiments

By attending R Bioconductor for Bioinformatics workshop, delegates will learn:

  • Sequencing Using Bioconductor
  • Extract Data from NCBI
  • Databases in Bioconductor
  • DNS Microarray

  • R Programming
  • Bioinformatics
  • Life Science Workers
  • Bioinformatics Analysts

COURSE AGENDA

1

Introduction to Bioinformatics

  • What is Bioinformatics
  • Types of online databases and online tools
  • Genomics resources
  • Protenomics resources
2

Introduction to bioConductor

  • BioConductor Website
  • installing BioConductor in R
  • Bioconductor packages, vignettes, tutorials
  • Bioconductor datasets(biocViews)
3

Databases in BioConductor

  • Annotation Hub
  • biomarts (online biomarts)
  • Genomic (full genomes)
  • GEOquery (NCBI Gene expression Omnibus) & ArrayExpress
  • KEGG (Kyto Encyclopedia for Genes and Genomes)
  • Gene libraries
4

Data files in BioConductor

  • Data containers
  • Importing data types
  • Downloading DNA
  • Manipulating DNA
5

DNA Blast

  • NCBI blast
  • Gene sequence blast
  • Protein blast
6

Ranges into BioConductor

  • Iranges
  • Granges
  • Granges plotting
  • Granges w genes
7

Visualizing Data in BioConductor

  • Visualizing genomic features
  • Visualizing DNA content
  • Visualizing gene expression

Encarta Labs Advantage

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View our other course offerings by visiting https://www.encartalabs.com/course-catalogue-all.php

Contact us for delivering this course as a public/open-house workshop/online training for a group of 10+ candidates.

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